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Publications

(**: equal contribution)

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  1. Kohei Yamada**, Jaivardhan A Menon, Yaunghyun Kim, Changde Cheng, Wenan Chen, Jenny A Shih, Ana B Villasenor-Altamirano, Xiang Chen, Tomoyoshi Tamura, Louis T Merriam, Edy Y Kim*, Alexandra J Weissman*. Protocol for immunophenotyping out-of-hospital cardiac arrest patients. STAR protocols, 5(1). 2024. 102874. https://doi.org/10.1016/j.xpro.2024.102874
     

  2. Conor Crowley, Justin Salciccioli, Wei Wang, Tomoyoshi Tamura, Edy Y Kim, Ari Moskowitz. The association between mechanical CPR and outcomes from in-hospital cardiac arrest: An observational cohort study. Resuscitation. 2024. 110142.  https://doi.org/10.1016/j.resuscitation.2024.110142
     

  3. Villaseñor-Altamirano AB**, Jain D**, Jeong Y, Menon JA, Kamiya M, Haider H, Manandhar R, Sheik MDA, Athar H, Merriam LT, Ryu MH, Sasaki T, Castaldi PJ, Rao DA, Sholl LM, Vivero M, Hersh CP, Zhou X, MGB-Bayer Pulmonary Drug Discovery Lab, Veerkamp J*, Yun JH*, Kim EY*. Activation of CD8+ T cells in COPD lung. Am J Resp Crit Care Med. 2023. PMID: 37756440. PMC Pending. https://doi.org/10.1164/rccm.202305-0924OC
     

  4. Yin S, Klaeger S, Chea VA, Carulli IP, Rachimi S, Black KE, Filbin M, Hariri LP, Knipe RS, Padera RF, Stevens JD, Lane WJ, Carr SA, Wu CJ*, Kim EY*, Keskin D*. Integrated immunopeptidomic and proteomic analysis of immune response to SARS-CoV-2 infection in the lung. Front Immunol. 2023. 14:1269335. PMC Pending.
     

  5. Tamura T.**, Cheng C.**, Chen W., Merriam LT., Athar H, Kim Y H, Manandhar R, Amir Sheikh MD, Pinilla-Vera M, Varon J, Hou PC, Lawler PR, Oldham WM, Seethala RR, Tesfaigzi Y, Weissman AJ, Baron RM, Ichinose F, Berg KM, Bohula EA, Morrow DA, Chen X*, Kim EY*. (2023). Single-cell transcriptomics reveal a hyperacute cytokine and immune checkpoint axis after cardiac arrest in patients with poor neurological outcome. Med, 4(7), 432-456.e6. https://doi.org/10.1016/j.medj.2023.05.003. (**: equal contribution)
     

  6. The Writing Committee for REMAP-CAP et al. Effect of angiotensin-converting enzyme inhibitor and angiotensin receptor blocker initiation on organ support free days in patients hospitalized with COVID-19. JAMA. 2023 11 Apr;329(14):1183-1196. PMID: 37039790. PMC10326520.
     

  7. Bohula EA, Berg DD, Lopes MS, Connors JM, Babar I, Barnett CF, Chaudhry S-P, Chopra A, Ginete W, Ieong MH, Katz JN, Kim EY, Kuder JF, Mazza E, McLean D, Mosier JM, Moskowitz A, Murphy SA, O’Donoghue ML, Park J-G, Prasad R, Ruff CT, Shahrour MN, Sinha SS, Wiviott SD, Van Diepen S, Zainea M, Baird-Zars V, Sabatine MS, Morrow DA. Anticoagulation and antiplatelet therapy for prevention of venous and arterial throbotic events in critically ill patients with COVID-19: COVID-PACT. Circulation. 2022 Aug 29. PMID: 36036760.
     

  8. Korsunsky, I.**, Wei, K.**, Pohin, M.**, Kim, E. Y.**, Barone, F.**, Major, T., Taylor, E., Ravindran, R., Kemble, S., Watts, G. F. M., Jonsson, A. H., Jeong, Y., Athar, H., Windell, D., Kang, J. B., Friedrich, M., Turner, J., Nayar, S., Fisher, B. A., … Raychaudhuri, S. (2022). Cross-tissue, single-cell stromal atlas identifies shared pathological fibroblast phenotypes in four chronic inflammatory diseases. Med. 3(7), 481-518.e14. https://doi.org/10.1016/j.medj.2022.05.002. (**: equal contribution)
     

  9. Simmons, D. P., Nguyen, H. N., Gomez-Rivas, E., Jeong, Y., Jonsson, A. H., Chen, A. F., Lange, J. K., Dyer, G. S., Blazar, P., Earp, B. E., Coblyn, J. S., Massarotti, E. M., Sparks, J. A., Todd, D. J., Accelerating Medicines Partnership (AMP) RA/SLE Network, Rao, D. A., Kim, E. Y., & Brenner, M. B. (2022). SLAMF7 engagement superactivates macrophages in acute and chronic inflammation. Science Immunol. 7(68), eabf2846. https://doi.org/10.1126/sciimmunol.abf2846.
     

  10. Wu, X.**, Jeong, Y.**, Frías, S. P. de, Easthausen, I., Hoffman, K., Oromendia, C., Taheri, S., Esposito, A. J., Arias, L. Q., Ayaub, E. A., Maurer, R., Gill, R. R., Hatabu, H., Nishino, M., Frits, M. L., Iannaccone, C. K., Weinblatt, M. E., Shadick, N. A., Dellaripa, P. F., …Kim EY, Doyle, T. J. (2022). Serum proteomic profiling of rheumatoid arthritis–interstitial lung disease with a comparison to idiopathic pulmonary fibrosis. Thorax. 77(10), 1041. https://doi.org/10.1136/thorax-2021-217822. (**: equal contribution)
     

  11. Steiger C, Phan NV, Huang HW, Sun H, Chu JN, Reker D, Gwynne D, Collins J, Tamang S, McManus R, Lopes A, Hayward A, Baron RM, Kim EY, Traverso G. Dynamic monitoring of systemic biomarkers with gastric sensors. Adv Sci. 2021;8(24):e2102861. PMID34713599. PMC8693042.
     

  12. Merriam LT, Bharadwaj M, Jezmir JL, Leaf DE, Kim EY. Protocol to assess performance of crisis standards of care guidelines for clinical triage. STAR Protoc. 2021;2(4)100943. PMID: 34786562. PMC8580414.
     

  13. Yun JH, Lee C, Liu T, Liu S, Kim EY, Xu S, Curtis JL, Pinello L, Bowler RP, Silverman EK, Hersh CP, Zhou X. Hedgehog interacting protein-expressing lung fibroblasts suppress lymphocytic inflammation in mice. JCI Insight. 2021;6(17):e144575. PMID: 34375314. PMC8492352.
     

  14. Jezmir JL**, Bharadwaj M**, Chaitoff A, Diephuis B, Crowley CP, Kishore SP, Goralnick E, Merriam LT, Milliken A, Rhee C, Sadovnikoff N, Shah SB, Gupta S, Leaf DE*, Feldman WB*, Kim EY*; STOP-COVID Investigators. Performance of Crisis Standards of Care guidelines in a cohort of critically ill COVID-19 patients in the United States. Cell Rep Med. 2021;2(9):100376. PMID: 34337554. PMC8316067. (**: equal contribution)
     

  15.  Bharadwaj M, Jezmir JL, Kishore SP, Winkler M, Diephus B, Haider H, Crowley CP, Pinilla-Vera M, Varon J, Baron RM, Feldman WB, Kim EY. Empirical Assessment of U.S. Coronavirus Disease 2019 Crisis Standards of Care Guidelines. Crit Care Explor. 2021 Jul; 3(7):e0496. PMID: 34286282.
     

  16. Rose SA, Wroblewska A, Dhainaut M, Yoshida H, Shaffer JM, Bektesevic A, Ben-Zvi B, Rhoads A, Kim EY, Yu B, Lavin Y, Merad M, Buenrostro JD, Brown BD. A microRNA expression and regulatory element activity atlas of the mouse immune system. Nat Immunol. 2021 Jul; 22(7):914-927. PMID: 34099919.
     

  17. Crowley CP, Merriam LT, Mueller AA, Tamura T, DeGrado JR, Haider H, Salciccioli JD, Kim EY. Protocol for assessing and predicting acute respiratory decline in hospitalized patients. STAR Protoc. 2021 Jun 18; 2(2):100545. PMID: 34027496.
     

  18. Crowley CP, Wan ES, Salciccioli JD, Kim E. The Use of Mechanical Cardiopulmonary Resuscitation May Be Associated With Improved Outcomes Over Manual Cardiopulmonary Resuscitation During Inhospital Cardiac Arrests. Crit Care Explor. 2020 Nov; 2(11):e0261. PMID: 33225303.
     

  19. Mueller AA**, Tamura T**, Crowley CP, DeGrado JR, Haider H, Jezmir JL, Keras G, Penn EH, Massaro AF, Kim EY. Inflammatory Biomarker Trends Predict Respiratory Decline in COVID-19 Patients. Cell Rep Med. 2020 Nov 17; 1(8):100144. PMID: 33163981. (**: equal contribution)
     

  20. DeGrado JR, Szumita PM, Schuler BR, Dube KM, Lenox J, Kim EY, Weinhouse GL, Massaro AF. Evaluation of the Efficacy and Safety of Inhaled Epoprostenol and Inhaled Nitric Oxide for Refractory Hypoxemia in Patients With Coronavirus Disease 2019. Crit Care Explor. 2020 Oct; 2(10):e0259. PMID: 33134949.
     

  21. Crowley CP, Salciccioli JD, Kim EY. The association between ACLS guideline deviations and outcomes from in-hospital cardiac arrest. Resuscitation. 2020 08; 153:65-70. PMID: 32502576.
     

  22. Crowley CP**, Salciccioli JD, Kim EY. The association between ACLS guideline deviations and outcomes from in-hospital cardiac arrest. Resuscitation. 2020;153:65-70. PMID: 32502576. PMC7750980.
     

  23. Kim EY, Ner-Gaon H, Varon J, Cullen AM, Guo J, Choi J, Barragan-Bradford D, Higuera A, Pinilla-Vera M, Short SA, Arciniegas-Rubio A, Tamura T, Leaf DE, Baron RM, Shay T, Brenner MB. Post-sepsis immunosuppression depends on NKT cell regulation of mTOR/IFN-γ in NK cells. J Clin Invest. 2020 06 01; 130(6):3238-3252. PMID: 32154791
     

  24. DeGrado JR, Szumita PM, Schuler BR, Dube KM, Lenox J, Kim EY, Weinhouse GL, Massaro AF. Evaluation of the efficacy and safety of inhaled epoprostenol and inhaled nitric oxide for refractory hypoxemia in patients with coronavirus disease 2019. Crit Care Explor. 2020;2(1):e0259. PMID: 33134949. PMC7581066.
     

  25. Nagai J, Balestrieri B, Fanning LB, Kyin T, Cirka H, Lin J, Idzko M, Zech A, Kim EY, Brennan PJ, Boyce JA. P2Y6 signaling in alveolar macrophages prevents leukotriene-dependent type 2 allergic lung inflammation. J Clin Invest. 2019 12 02; 129(12):5169-5186. PMID: 31638598.
     

  26. Chu SG, Villalba JA, Liang X, Xiong K, Tsoyi K, Ith B, Ayaub EA, Tatituri RV, Byers DE, Hsu FF, El-Chemaly S, Kim EY, Shi Y, Rosas IO. Palmitic Acid-Rich High-Fat Diet Exacerbates Experimental Pulmonary Fibrosis by Modulating Endoplasmic Reticulum Stress. Am J Respir Cell Mol Biol. 2019 12; 61(6):737-746. PMID: 31461627.
     

  27. Lee PY, Nelson-Maney N, Huang Y, Levescot A, Wang Q, Wei K, Cunin P, Li Y, Lederer JA, Zhuang H, Han S, Kim EY, Reeves WH, Nigrovic PA. High-dimensional analysis reveals a pathogenic role of inflammatory monocytes in experimental diffuse alveolar hemorrhage. JCI Insight. 2019 08 08; 4(15). PMID: 31391335.
     

  28. Cunin P, Lee PY, Kim E, Schmider AB, Cloutier N, Pare A, Gunzer M, Soberman RJ, Lacroix S, Boilard E, Lefort CT, Nigrovic PA. Differential attenuation of ß2 integrin-dependent and -independent neutrophil migration by Ly6G ligation. Blood Adv. 2019 02 12; 3(3):256-267. PMID: 30696624.
     

  29. Yoshida H, Lareau CA, Ramirez RN, Rose SA, Maier B, Wroblewska A, Desland F, Chudnovskiy A, Mortha A, Dominguez C, Tellier J, Kim E, Dwyer D, Shinton S, Nabekura T, Qi Y, Yu B, Robinette M, Kim KW, Wagers A, Rhoads A, Nutt SL, Brown BD, Mostafavi S, Buenrostro JD, Benoist C. The cis-Regulatory Atlas of the Mouse Immune System. Cell. 2019 02 07; 176(4):897-912.e20. PMID: 30686579.
     

  30. Cunin P, Lee PY, Kim E, Schmider AB, Cloutier N, Pare A, Gunzer M, Soberman RJ, Lacroix S, Boilard E, Lefort CT, Nigrovic PA. Differential attenuation of β2 integrin-dependent and -independent neutrophil migration by Ly6G ligation. Blood Adv. 2019;3:256-67. PMID: 30696624. PMC6373735.
     

  31. Cohen NR, Tatituri RV, Rivera A, Watts GF, Kim EY, Chiba A, Fuchs BB, Mylonakis E, Besra GS, Levitz SM, Brigl M, Brenner MB. Innate recognition of cell wall ß-glucans drives invariant natural killer T cell responses against fungi. Cell Host Microbe. 2011; 10: 437-50. PMID: 22100160.  PMC5016029
     

  32. Brennan PJ, Tatituri RV, Brigl M, Kim EY, Tuli A, Sanderson JP, Gadola SD, Hsu FF, Besra GS, Brenner MB. Invariant natural killer T cells recognize lipid self antigen induced by microbial danger signals. Nature Immunol. 2011; 12:1202-11. PMID: 22037601. PMC3242449.
     

  33. Kim EY, Battaile JT, Patel AC, You Y, Agapov E, Grayson MH, Benoit LA, Byers DE, Alevy Y, Tucker J, Swanson S, Tidwell R, Tyner JW, Morton JD, Castro M, Polineni D, Patterson GA, Schwendener RA, Allard JD, Peltz G, Holtzman MJ†. Persistent activation of an innate response translates respiratory viral infection into chronic lung disease. Nature Med. 2008;14(6):633-40. PMC2575848.
     

  34. Grayson MH, Cheung D, Rohlfing MM, Kitchens R, Spiegel DE, Tucker J, Battaile JT, Alevy Y, Yan L, Agapov E, Kim EY, Holtzman MJ. Induction of high-affinity IgE receptor on lung dendritic cells during viral infection leads to mucous cell metaplasia. J Exp Med. 2007;204:2759-69. PMID:17954569 PMC2118483.
     

  35. Tyner JW, Kim EY, Ide K, Pelletier MR, Roswit WT, Morton JD, Battaile JT, Patel AC, Patterson GA, Castro M, Spoor MS, You Y, Brody SL, Holtzman MJ. Blocking airway mucous cell metaplasia by inhibiting EGFR antiapoptosis and IL-13 transdifferentiation signals. J Clin Invest. 2006;116:309-21. PMID:16453019 PMC1359039.

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